Search results for "Weighted network"
showing 4 items of 4 documents
Gene-based and semantic structure of the Gene Ontology as a complex network
2012
The last decade has seen the advent and consolidation of ontology based tools for the identification and biological interpretation of classes of genes, such as the Gene Ontology. The information accumulated time-by-time and included in the GO is encoded in the definition of terms and in the setting up of semantic relations amongst terms. This approach might be usefully complemented by a bottom-up approach based on the knowledge of relationships amongst genes. To this end, we investigate the Gene Ontology from a complex network perspective. We consider the semantic network of terms naturally associated with the semantic relationships provided by the Gene Ontology consortium and a gene-based …
Inferring species interactions from ecological survey data: a mechanistic approach to predict quantitative food webs of seed-feeding by carabid beetl…
2020
AbstractEcological networks are valuable for ecosystem analysis but their use is often limited by a lack of data because many types of ecological interaction, e.g. predation, are short-lived and difficult to observe or detect. There are different methods for inferring the presence of interactions, which we lack methods to predict interaction strengths and so use weighted network analysis.Here, we develop a trait-based approach suitable for creating quantitative networks, i.e. with varying interaction strengths. We developed the method for seed-feeding carabid ground beetles (Coleoptera: Carabidae) although the principles can be applied to other interactions.We used existing literature data …
User and group networks on YouTube: A comparative analysis
2015
International audience; YouTube is the largest video-sharing social network where users (aka channels) can create links to any other users. Moreover, initially, users were allowed to create and join special groups of interest. Therefore, two types of online social networks can be defined. First, a user network where the nodes represent the users and the edges represent the social ties (friendship) between users. Second, a group network where the nodes represent the groups and the edges represent the social ties between groups, due to shared users. As the group network can be apprehended as the ground-truth overlapping community graph (where the nodes are the discovered communities and the l…
A stochastic approach for extracting community-based backbones
2022
Large-scale dense networks are very parvasive in various fields such as communication, social analytics, architecture, bio-metrics, etc. Thus, the need to build a compact version of the networks allowing their analysis is a matter of great importance. One of the main solutions to reduce the size of the network while maintaining its characteristics is backbone extraction techniques. Two types of methods are distinguished in the literature: similar nodes are gathered and merged in coarse-graining techniques to compress the network, while filter-based methods discard edges and nodes according to some statistical properties. In this paper, we propose a filtering-based approach which is based on…